EPH receptor B2

Protein-coding gene in the species Homo sapiens
EPHB2
Available structures
PDBOrtholog search: PDBe RCSB
List of PDB id codes

1B4F, 1F0M, 2QBX, 3ZFM

Identifiers
AliasesEPHB2, Ephb2, Cek5, Drt, ETECK, Erk, Hek5, Nuk, Prkm5, Qek5, Sek3, Tyro5, CAPB, EK5, EPHT3, PCBC, EPH receptor B2, DRT, ERK, BDPLT22
External IDsOMIM: 600997 MGI: 99611 HomoloGene: 37925 GeneCards: EPHB2
Gene location (Human)
Chromosome 1 (human)
Chr.Chromosome 1 (human)[1]
Chromosome 1 (human)
Genomic location for EPHB2
Genomic location for EPHB2
Band1p36.12Start22,710,839 bp[1]
End22,921,500 bp[1]
Gene location (Mouse)
Chromosome 4 (mouse)
Chr.Chromosome 4 (mouse)[2]
Chromosome 4 (mouse)
Genomic location for EPHB2
Genomic location for EPHB2
Band4 D3|4 69.0 cMStart136,374,850 bp[2]
End136,563,299 bp[2]
RNA expression pattern
Bgee
HumanMouse (ortholog)
Top expressed in
  • ganglionic eminence

  • rectum

  • duodenum

  • islet of Langerhans

  • cecum

  • appendix

  • pericardium

  • periodontal fiber

  • human penis

  • prefrontal cortex
Top expressed in
  • internal carotid artery

  • crypt of lieberkuhn of small intestine

  • external carotid artery

  • Paneth cell

  • ganglionic eminence

  • maxillary prominence

  • abdominal wall

  • medial ganglionic eminence

  • vas deferens

  • left colon
More reference expression data
BioGPS




More reference expression data
Gene ontology
Molecular function
  • transferase activity
  • nucleotide binding
  • protein kinase activity
  • transmembrane-ephrin receptor activity
  • kinase activity
  • protein binding
  • identical protein binding
  • transmembrane receptor protein tyrosine kinase activity
  • protein tyrosine kinase activity
  • signaling receptor binding
  • ATP binding
  • axon guidance receptor activity
  • ephrin receptor activity
  • amyloid-beta binding
  • signaling receptor activity
  • protein-containing complex binding
Cellular component
  • integral component of membrane
  • cytosol
  • cell projection
  • membrane
  • integral component of plasma membrane
  • extracellular region
  • axon
  • neuronal cell body
  • dendrite
  • nucleus
  • plasma membrane
  • neuron projection
  • receptor complex
  • postsynapse
  • glutamatergic synapse
  • integral component of postsynaptic membrane
  • integral component of presynaptic membrane
Biological process
  • positive regulation of synapse assembly
  • roof of mouth development
  • phosphorylation
  • transmembrane receptor protein tyrosine kinase signaling pathway
  • optic nerve morphogenesis
  • ephrin receptor signaling pathway
  • learning
  • commissural neuron axon guidance
  • nervous system development
  • multicellular organism development
  • regulation of axonogenesis
  • dendritic spine development
  • dendritic spine morphogenesis
  • negative regulation of axonogenesis
  • protein phosphorylation
  • positive regulation of long-term neuronal synaptic plasticity
  • regulation of body fluid levels
  • inner ear morphogenesis
  • angiogenesis
  • cell morphogenesis
  • animal organ morphogenesis
  • regulation of neuronal synaptic plasticity
  • urogenital system development
  • peptidyl-tyrosine phosphorylation
  • corpus callosum development
  • central nervous system projection neuron axonogenesis
  • axonal fasciculation
  • camera-type eye morphogenesis
  • retinal ganglion cell axon guidance
  • axon guidance
  • trans-synaptic signaling by trans-synaptic complex, modulating synaptic transmission
  • negative regulation of protein phosphorylation
  • learning or memory
  • positive regulation of gene expression
  • positive regulation of synaptic plasticity
  • negative regulation of Ras protein signal transduction
  • regulation of synapse assembly
  • negative regulation of ERK1 and ERK2 cascade
  • postsynaptic membrane assembly
  • neuron projection retraction
  • positive regulation of long-term synaptic potentiation
  • positive regulation of protein localization to plasma membrane
  • negative regulation of NMDA glutamate receptor activity
  • positive regulation of NMDA glutamate receptor activity
Sources:Amigo / QuickGO
Orthologs
SpeciesHumanMouse
Entrez

2048

13844

Ensembl

ENSG00000133216

ENSMUSG00000028664

UniProt

P29323

P54763

RefSeq (mRNA)

NM_001309192
NM_001309193
NM_004442
NM_017449

NM_001290753
NM_010142

RefSeq (protein)

NP_001296121
NP_001296122
NP_004433
NP_059145

NP_001277682
NP_034272

Location (UCSC)Chr 1: 22.71 – 22.92 MbChr 4: 136.37 – 136.56 Mb
PubMed search[3][4]
Wikidata
View/Edit HumanView/Edit Mouse

Ephrin type-B receptor 2 is a protein that in humans is encoded by the EPHB2 gene.[5]

Function

Ephrin receptors and their ligands, the ephrins, mediate numerous developmental processes, particularly in the nervous system. Based on their structures and sequence relationships, ephrins are divided into the ephrin-A (EFNA) class, which are anchored to the membrane by a glycosylphosphatidylinositol linkage, and the ephrin-B (EFNB) class, which are transmembrane proteins. The Eph family of receptors are divided into 2 groups based on the similarity of their extracellular domain sequences and their affinities for binding ephrin-A and ephrin-B ligands. Ephrin receptors make up the largest subgroup of the receptor tyrosine kinase (RTK) family. The protein encoded by this gene is a receptor for ephrin-B family members.[6]

Animal studies

EphB2 is part of the NMDA signaling pathway and restoring expression rescues cognitive function in an animal model of Alzheimer's disease.[7]

A recessive EphB2 gene is responsible for the crested-feather mutation in pigeons.[8]

Interactions

EPH receptor B2 has been shown to interact with:

References

  1. ^ a b c GRCh38: Ensembl release 89: ENSG00000133216 – Ensembl, May 2017
  2. ^ a b c GRCm38: Ensembl release 89: ENSMUSG00000028664 – Ensembl, May 2017
  3. ^ "Human PubMed Reference:". National Center for Biotechnology Information, U.S. National Library of Medicine.
  4. ^ "Mouse PubMed Reference:". National Center for Biotechnology Information, U.S. National Library of Medicine.
  5. ^ Chan J, Watt VM (August 1991). "eek and erk, new members of the eph subclass of receptor protein-tyrosine kinases". Oncogene. 6 (6): 1057–61. PMID 1648701.
  6. ^ "Entrez Gene: EPHB2 EPH receptor B2".
  7. ^ Cissé M, Halabisky B, Harris J, Devidze N, Dubal DB, Sun B, Orr A, Lotz G, Kim DH, Hamto P, Ho K, Yu GQ, Mucke L (January 2011). "Reversing EphB2 depletion rescues cognitive functions in Alzheimer model". Nature. 469 (7328): 47–52. Bibcode:2011Natur.469...47C. doi:10.1038/nature09635. PMC 3030448. PMID 21113149.
    • "Protein provides Alzheimer's clue". NHS Choices. November 29, 2010. Archived from the original on 2011-05-18.
  8. ^ Shapiro MD, Kronenberg Z, Li C, Domyan ET, Pan H, Campbell M, Tan H, Huff CD, Hu H, Vickrey AI, Nielsen SC, Stringham SA, Hu H, Willerslev E, Gilbert MT, Yandell M, Zhang G, Wang J (January 2013). "Genomic diversity and evolution of the head crest in the rock pigeon". Science. 339 (6123): 1063–7. Bibcode:2013Sci...339.1063S. doi:10.1126/science.1230422. PMC 3778192. PMID 23371554.
    • Carl Zimmer (February 4, 2013). "Pigeons Get a New Look". The New York Times.
  9. ^ Yu HH, Zisch AH, Dodelet VC, Pasquale EB (July 2001). "Multiple signaling interactions of Abl and Arg kinases with the EphB2 receptor". Oncogene. 20 (30): 3995–4006. doi:10.1038/sj.onc.1204524. PMID 11494128.
  10. ^ Holland SJ, Gale NW, Gish GD, Roth RA, Songyang Z, Cantley LC, Henkemeyer M, Yancopoulos GD, Pawson T (July 1997). "Juxtamembrane tyrosine residues couple the Eph family receptor EphB2/Nuk to specific SH2 domain proteins in neuronal cells". EMBO J. 16 (13): 3877–88. doi:10.1093/emboj/16.13.3877. PMC 1170012. PMID 9233798.
  11. ^ Zisch AH, Kalo MS, Chong LD, Pasquale EB (May 1998). "Complex formation between EphB2 and Src requires phosphorylation of tyrosine 611 in the EphB2 juxtamembrane region". Oncogene. 16 (20): 2657–70. doi:10.1038/sj.onc.1201823. PMID 9632142.
  12. ^ Zisch AH, Pazzagli C, Freeman AL, Schneller M, Hadman M, Smith JW, Ruoslahti E, Pasquale EB (January 2000). "Replacing two conserved tyrosines of the EphB2 receptor with glutamic acid prevents binding of SH2 domains without abrogating kinase activity and biological responses". Oncogene. 19 (2): 177–87. doi:10.1038/sj.onc.1203304. PMID 10644995.
  • v
  • t
  • e
  • 1b4f: OLIGOMERIC STRUCTURE OF THE HUMAN EPHB2 RECEPTOR SAM DOMAIN
    1b4f: OLIGOMERIC STRUCTURE OF THE HUMAN EPHB2 RECEPTOR SAM DOMAIN
  • 1f0m: MONOMERIC STRUCTURE OF THE HUMAN EPHB2 SAM (STERILE ALPHA MOTIF) DOMAIN
    1f0m: MONOMERIC STRUCTURE OF THE HUMAN EPHB2 SAM (STERILE ALPHA MOTIF) DOMAIN
  • 1jpa: Crystal Structure of unphosphorylated EphB2 receptor tyrosine kinase and juxtamembrane region
    1jpa: Crystal Structure of unphosphorylated EphB2 receptor tyrosine kinase and juxtamembrane region
  • 1kgy: Crystal Structure of the EphB2-ephrinB2 complex
    1kgy: Crystal Structure of the EphB2-ephrinB2 complex
  • 1nuk: CRYSTAL STRUCTURE OF THE LIGAND-BINDING DOMAIN OF THE EPHB2 RECEPTOR TYROSINE KINASE
    1nuk: CRYSTAL STRUCTURE OF THE LIGAND-BINDING DOMAIN OF THE EPHB2 RECEPTOR TYROSINE KINASE
  • 1sgg: THE SOLUTION STRUCTURE OF SAM DOMAIN FROM THE RECEPTOR TYROSINE KINASE EPHB2, NMR, 10 STRUCTURES
    1sgg: THE SOLUTION STRUCTURE OF SAM DOMAIN FROM THE RECEPTOR TYROSINE KINASE EPHB2, NMR, 10 STRUCTURES
  • 1shw: EphB2 / EphrinA5 Complex Structure
    1shw: EphB2 / EphrinA5 Complex Structure
  • 2hen: Crystal Structure of the EphB2 Receptor Kinase domain in complex with ADP
    2hen: Crystal Structure of the EphB2 Receptor Kinase domain in complex with ADP
  • v
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Growth factor receptors
EGF receptor family
Insulin receptor family
PDGF receptor family
FGF receptor family
VEGF receptors family
HGF receptor family
Trk receptor family
EPH receptor family
LTK receptor family
TIE receptor family
ROR receptor family
DDR receptor family
PTK7 receptor family
RYK receptor family
MuSK receptor family
ROS receptor family
AATYK receptor family
AXL receptor family
RET receptor family
uncategorised
ABL family
ACK family
CSK family
FAK family
FES family
FRK family
JAK family
SRC-A family
SRC-B family
TEC family
  • TEC
  • BMX
  • BTK
  • ITK
  • TXK
SYK family
Portal:
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Angiopoietin
  • Kinase inhibitors: Altiratinib
  • CE-245677
  • Rebastinib
CNTF
EGF (ErbB)
EGF
(ErbB1/HER1)
ErbB2/HER2
  • Agonists: Unknown/none
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FGF
FGFR1
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  • Antibodies: Aprutumab
  • Aprutumab ixadotin
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Unsorted
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IGF
IGF-1
  • Kinase inhibitors: BMS-754807
  • Linsitinib
  • NVP-ADW742
  • NVP-AEW541
  • OSl-906
IGF-2
  • Antibodies: Dusigitumab
  • Xentuzumab (against IGF-1 and IGF-2)
Others
  • Cleavage products/derivatives with unknown target: Glypromate (GPE, (1-3)IGF-1)
  • Trofinetide
LNGF (p75NTR)
  • Aptamers: Against NGF: RBM-004
  • Decoy receptors: LEVI-04 (p75NTR-Fc)
PDGF
RET (GFL)
GFRα1
GFRα2
GFRα3
GFRα4
Unsorted
  • Kinase inhibitors: Agerafenib
SCF (c-Kit)
TGFβ
  • See here instead.
Trk
TrkA
  • Negative allosteric modulators: VM-902A
  • Aptamers: Against NGF: RBM-004
  • Decoy receptors: ReN-1820 (TrkAd5)
TrkB
TrkC
VEGF
Others

This article incorporates text from the United States National Library of Medicine, which is in the public domain.


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